SNP Profiles of AMAZ 3/2   View Data

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 1234567891011121314
_Input profile
CCAACCTTTTTTTTCTCCAAGGCCAACT
1._GC-03-022-2-11
CCAACCTTTTTTTTCTCCAAGGCCAACT
2._GC-03-022-2-11
CCAACCTTTTTTTTCTCCAAGGCCAACT
3._GC-03-022-2-11
CCAACCTTTTTTTTCTCCAAGGCCAACT
4._GC-03-022-2-11
CCAACCTTTTTTTTCTCCAAGGCCAACT
5._GC-03-022-2-11
CCAACCTTTTTTTTCTCCAAGGCCAACT
6._GC-03-022-2-11
CCAACCTTTTTTTTCTCCAAGGCCAACT
7._GC-03-022-2-11
CCAACCTTTTTTTTCTCCAAGGCCAACT
8._AMAZ_3_/2
CCAACCTTTTTTTTCTCCAAGGCCAACT
9._AMAZ_3_/2
CCAACCTTTTTTTTCTCCAAGGCCAACT
10._AMAZ_3_/2
CCAACCTTTTTTTTCTCCAAGGCCAACT
11._AMAZ_3_/2
CCAACCTTTTTTTTCTCCAAGGCCAACT
12._AMAZ_3_/2
CCAACCTTTTTTTTCTCCAAGGCCAACT
13._AMAZ_3_/2
CCAACCTTTTTTTTCTCCAAGGCCAACT
14._AMAZ_3_/2
CCAACCTTTTTTTTCTCCAAGGCCAACT
15._GC-03-022-2-11
CCAACCTT_TTTTCTCCAAGGCCAACT
16._GC-03-022-2-11
CCAACCTTTTTTTTCTCCAAGGCCAACT
17._GC-03-022-2-11
CC_CCTTTTTTTTCTCCAAGGCCAACT
18._AMAZ_3_/2
CCAACCTTTTTTTTCTCCAAGGCCAACT
19._AMAZ_3_/2
CCAACCTT_TTTTCTCCAAGGCCAACT
20._AMAZ_3_/2
CC_CCTTTTTTTTCTCCAAGGCCAACT
21._RUQ_91
_AACC-__TT____CCAA_
22._RUQ_91
__CC___TT_CC_GG_AA_
23._RUQ_91
CCAGCCTTTTTTTTCTCCAAGGCTAACT
24._AMAZ_3_/2
CCAGCCTTTTTTGTCCCCAAAGCCAGCT
25._GC-03-022-2-11
CCAGCCTTTTTTGTCCCCAAAGCCAGCT
26._GC-03-022-2-11
CCAGCCTTTTTTGTCCCCAAAGCCAGCT
27._GC-03-022-2-11
CCAGCCTTTTTTGTCCCCAAAGCCAGCT
28._AMAZ_3_/2
CCAGCCTTTTTTGTCCCCAAAGCCAGCT
29._AMAZ_3_/2
CCAGCCTTTTTTGTCCCCAAAGCCAGCT
30._GC-03-022-2-11
CCAGCCTTTTTTGTCCCCAAAGCCAGCT
31._AMAZ_3_/2
CCAGCCTTTTTTGTCCCCAAAGCCAGCT
32._RUQ_91
GGAAGGAAAAAAAA__AAGGGGAAAG
 1516171819202122232425262728
_Input profile
ATGGCTCCCGGTAACCAAGGCCCCAAGG
1._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
2._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
3._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
4._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
5._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
6._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
7._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
8._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
9._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
10._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
11._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
12._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
13._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
14._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
15._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
16._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
17._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
18._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
19._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
20._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
21._RUQ_91
___CC-GT_CCAA-CCCC-_
22._RUQ_91
____CGGTAA_AA__CC__
23._RUQ_91
ATGGCTCCCGGTAACCAAGGCCCCAAGG
24._AMAZ_3_/2
AACGCCCTGGGGAACTACGGCTCCAGGG
25._GC-03-022-2-11
AACGCCCTGGGGAACTACGGCTCCAGGG
26._GC-03-022-2-11
AACGCCCTGGGGAACTACGGCTCCAGGG
27._GC-03-022-2-11
AACGCCCTGGGGAACTACGGCTCCAGGG
28._AMAZ_3_/2
AACGCCCTGGGGAACTACGGCTCCAGGG
29._AMAZ_3_/2
AACGCCCTGGGGAACTACGGCTCCAGGG
30._GC-03-022-2-11
AACGCCCTGGGG_CTACGGCTCCAGGG
31._AMAZ_3_/2
AACGCCCTGGGG_CTACGGCTCCAGGG
32._RUQ_91
ATGGAGGGCGAC_GGAACC_CC_GG
 29303132333435363738    
_Input profile
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
1._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
2._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
3._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
4._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
5._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
6._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
7._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
8._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
9._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
10._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
11._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
12._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
13._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
14._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
15._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
16._GC-03-022-2-11
ATTTAAGGAA_GTAAATGGX_XX_XX_XX_X
17._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
18._AMAZ_3_/2
ATTTAAGGAA_GTAAATGGX_XX_XX_XX_X
19._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
20._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
21._RUQ_91
AT-AAGGAACCGTAA__X_XX_XX_XX_X
22._RUQ_91
__AA____AA__X_XX_XX_XX_X
23._RUQ_91
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
24._AMAZ_3_/2
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
25._GC-03-022-2-11
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
26._GC-03-022-2-11
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
27._GC-03-022-2-11
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
28._AMAZ_3_/2
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
29._AMAZ_3_/2
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
30._GC-03-022-2-11
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
31._AMAZ_3_/2
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
32._RUQ_91
ATAAAACCAAGGACAAATGGX_XX_XX_XX_X

Input profile: AMAZ_3_/2

 
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Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

2._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

7._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

8._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

12._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

13._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

14._AMAZ_3_/2

identical
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

15._AMAZ_3_/2 GC-03-022-2-11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._AMAZ_3_/2 GC-03-022-2-11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

18._AMAZ_3_/2

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

19._AMAZ_3_/2

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

20._AMAZ_3_/2

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

21._AMAZ_3_/2 RUQ_91

identical
18 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._AMAZ_3_/2 RUQ_91

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._AMAZ_3_/2 RUQ_91

97.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

25._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

27._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

29._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

30._AMAZ_3_/2 GC-03-022-2-11

66.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._AMAZ_3_/2

66.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

32._AMAZ_3_/2 RUQ_91

48.5 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25